After installing ROOT’s conda package, for example with micromamba
:
micromamba create -n root -c conda-forge root python==3.8 matplotlib
and then installing the kernel for JupyterHub:
ipython kernel install --name root --user
Unfortunately import ROOT
gives the error:
ERROR in cling::CIFactory::createCI(): cannot extract standard library include paths!
Invoking:
LC_ALL=C x86_64-conda-linux-gnu-c++ -DNDEBUG -xc++ -E -v /dev/null 2>&1 | sed -n -e '/^.include/,${' -e '/^ \/.*++/p' -e '}'
Results was:
With exit code 0
The fix, found after more than 1 hour of search, is at https://root-forum.cern.ch/t/jupyroot-in-jupyterhub-cling-init-can-not-extract-standard-include-library-paths/46890:
Edit the kernel.json
file and modify the PATH variable:
{
"argv": [
"/home/jovyan/micromamba/envs/root/bin/python3.8",
"-m",
"ipykernel_launcher",
"-f",
"{connection_file}"
],
"display_name": "root",
"language": "python",
"metadata": {
"debugger": true
},
"env": {
"PATH": "/home/jovyan/micromamba/envs/root/bin/:${PATH}"
}
}